HL_8C3A_014

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8C3A|1|1|C|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8C3A|1|1|U|638
8C3A|1|1|C|639
8C3A|1|1|U|640
8C3A|1|1|U|641
8C3A|1|1|G|642
8C3A|1|1|A|643
8C3A|1|1|A|644
8C3A|1|1|A|645
8C3A|1|1|C|646
8C3A|1|1|A|647

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AF

60S ribosomal protein L32

Chain k

60S ribosomal protein L3