HL_3JAJ_032

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGGUAAGCA

Length

9 nucleotides

Bulged bases

3JAJ|1|5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_032 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3258

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3JAJ|1|5|U|1863
3JAJ|1|5|G|1864
3JAJ|1|5|G|1865
3JAJ|1|5|U|1866
3JAJ|1|5|A|1867
3JAJ|1|5|A|1868
3JAJ|1|5|G|1869
3JAJ|1|5|C|1870
3JAJ|1|5|A|1871

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein uL16

Chain b

Ribosomal protein eL29