HL_3JAJ_058

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

3JAJ|1|5|A|3876, 3JAJ|1|5|A|3877, 3JAJ|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_058 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.2596

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAJ|1|5|G|3873
3JAJ|1|5|G|3874
3JAJ|1|5|G|3875
3JAJ|1|5|A|3876
3JAJ|1|5|A|3877
3JAJ|1|5|C|3878
3JAJ|1|5|G|3879
3JAJ|1|5|G|3880
3JAJ|1|5|G|3881
3JAJ|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain e

Ribosomal protein eL32