HL_3JAJ_082

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

3JAJ|1|8|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_082 not in the Motif Atlas

Homologous match to HL_8P9A_188

Geometric discrepancy: 0.4056

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

3JAJ|1|8|C|107
3JAJ|1|8|A|108
3JAJ|1|8|C|109
3JAJ|1|8|U|110
3JAJ|1|8|U|111
3JAJ|1|8|G|112

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

Ribosomal protein uL23

Chain j

Ribosomal protein eL37

Chain l

Ribosomal protein eL39