HL_3JAJ_097

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCAGCCGC

Length

8 nucleotides

Bulged bases

3JAJ|1|S2|G|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_097 not in the Motif Atlas

Geometric match to HL_9PN5_103

Geometric discrepancy: 0.3748

The information below is about HL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3JAJ|1|S2|G|617
3JAJ|1|S2|C|618
3JAJ|1|S2|A|619
3JAJ|1|S2|G|620
3JAJ|1|S2|C|621
3JAJ|1|S2|C|622
3JAJ|1|S2|G|623
3JAJ|1|S2|C|624

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SX

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30