HL_3JAJ_101

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_101 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.372

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JAJ|1|S2|U|885
3JAJ|1|S2|A|886
3JAJ|1|S2|U|887
3JAJ|1|S2|U|888
3JAJ|1|S2|U|889
3JAJ|1|S2|U|890
3JAJ|1|S2|G|891
3JAJ|1|S2|U|892
3JAJ|1|S2|U|893
3JAJ|1|S2|G|894
3JAJ|1|S2|G|895
3JAJ|1|S2|U|896
3JAJ|1|S2|U|897
3JAJ|1|S2|U|898
3JAJ|1|S2|U|899
3JAJ|1|S2|C|900
3JAJ|1|S2|G|901

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SL

Ribosomal protein uS17