HL_3JAJ_114
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 3JAJ|1|S2|U|1621, 3JAJ|1|S2|U|1622, 3JAJ|1|S2|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAJ_114 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2628
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3JAJ|1|S2|A|1614
3JAJ|1|S2|U|1615
3JAJ|1|S2|U|1616
3JAJ|1|S2|G|1617
3JAJ|1|S2|C|1618
3JAJ|1|S2|A|1619
3JAJ|1|S2|A|1620
3JAJ|1|S2|U|1621
3JAJ|1|S2|U|1622
3JAJ|1|S2|A|1623
3JAJ|1|S2|U|1624
3JAJ|1|S2|U|1625
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SP
- Ribosomal protein uS19
- Chain SS
- Ribosomal protein uS13
- Chain ST
- Ribosomal protein eS19
- Chain Sd
- Ribosomal protein uS14
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