HL_3JAJ_136

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGCGGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_136 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3029

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JAJ|1|S2|G|1420
3JAJ|1|S2|A|1421
3JAJ|1|S2|G|1422
3JAJ|1|S2|C|1423
3JAJ|1|S2|G|1424
3JAJ|1|S2|G|1425
3JAJ|1|S2|U|1426
3JAJ|1|S2|C|1427

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

Ribosomal protein uS9

Chain ST

Ribosomal protein eS19