HL_3JAM_001

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

3JAM|1|2|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70574.1

Basepair signature

cWW-R-tHW-R-R-R-R-R-R

Number of instances in this motif group

13

Unit IDs

3JAM|1|2|G|7
3JAM|1|2|U|8
3JAM|1|2|U|9
3JAM|1|2|G|10
3JAM|1|2|A|11
3JAM|1|2|U|12
3JAM|1|2|C|13
3JAM|1|2|C|14
3JAM|1|2|U|15
3JAM|1|2|G|16
3JAM|1|2|C|17

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain X

uS12