Motif HL_70574.1 Version HL_70574.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-10 | 1-11 | 2-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7P_077 | 3J7P | 0.1651 | 0 | S2 | SSU rRNA | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | ncWw | cWW | tHW |
| 2 | HL_4BTS_110 | 4BTS | 0.1239 | 0 | DA | SSU rRNA | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW | |
| 3 | HL_4V88_186 | 4V88 | 0.1044 | 0 | A6 | SSU rRNA | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW | |
| 4 | HL_5A2Q_001 | 5A2Q | 0.1160 | 0 | 2 | SSU rRNA | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | ntHW | |
| 5 | HL_3J7A_001 | 3J7A | 0.0000 | 0 | A | SSU rRNA | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | U | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW | |
| 6 | HL_3JAM_001 | 3JAM | 0.0933 | 0 | 2 | SSU rRNA | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW | |
| 7 | HL_3J9W_001 | 3J9W | 0.2353 | 0 | AA | SSU rRNA | U | 14 | U | 15 | U | 16 | G | 17 | A | 18 | U | 19 | C | 20 | C | 21 | U | 22 | G | 23 | G | 24 | cWW | tHW | |
| 8 | HL_5AJ3_001 | 5AJ3 | 0.2550 | 0 | A | SSU rRNA | U | 8 | U | 9 | U | 10 | G | 11 | G | 12 | U | 13 | C | 14 | C | 15 | U | 16 | G | 17 | G | 18 | cWW | tHW | |
| 9 | HL_4V4Q_104 | 4V4Q | 0.2396 | 0 | CA | SSU rRNA | U | 12 | U | 13 | U | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | |
| 10 | HL_1FJG_001 | 1FJG | 0.2404 | 0 | A | SSU rRNA | U | 12 | U | 13 | U | 14 | G | 15 | A | 16 | U | 17 | C | 18 | C | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | |
| 11 | HL_3J9M_041 | 3J9M | 0.2737 | 0 | AA | SSU rRNA | U | 654 | U | 655 | U | 656 | G | 657 | G | 658 | U | 659 | C | 660 | C | 661 | U | 662 | A | 663 | G | 664 | cWW | tHW | |
| 12 | HL_4XWF_002 | 4XWF | 0.6751 | 0 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 52 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW | ||
| 13 | HL_4ZNP_002 | 4ZNP | 0.9205 | 0 | A | ZMP/ZTP riboswitch | C | 58 | G | 59 | A | 60 | C | 61 | C | 62 | G | 63 | C | 64 | C | 65 | U | 66 | G | 67 | G | 68 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUGAUCCUGC | 5 |
| UUUGAUCCUGG | 2 |
| GUUGAUCUUGC | 1 |
| UUUGGUCCUGG | 1 |
| UUUGAUCAUGG | 1 |
| UUUGGUCCUAG | 1 |
| CGCCCGCCUGG | 1 |
| CGACCGCCUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAUCCUG | 7 |
| UUGAUCUUG | 1 |
| UUGGUCCUG | 1 |
| UUGAUCAUG | 1 |
| UUGGUCCUA | 1 |
| GCCCGCCUG | 1 |
| GACCGCCUG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Basepair signature
- cWW-R-tHW-R-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.35 | Max 0.92
Coloring options: