HL_3JAM_014

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23500.1

Basepair signature

cWW-cWW-R-tSH-R-tSH-R-R

Number of instances in this motif group

6

Unit IDs

3JAM|1|2|A|519
3JAM|1|2|A|520
3JAM|1|2|U|521
3JAM|1|2|G|522
3JAM|1|2|U|523
3JAM|1|2|A|524
3JAM|1|2|A|525
3JAM|1|2|A|526
3JAM|1|2|U|527
3JAM|1|2|A|528
3JAM|1|2|C|529
3JAM|1|2|C|530
3JAM|1|2|U|531

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain Y

eS24