Motif HL_23500.1 Version HL_23500.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 4-10 | 5-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3JAM_014 | 3JAM | 0.1105 | 0 | 2 | SSU rRNA | A | 519 | A | 520 | U | 521 | G | 522 | U | 523 | A | 524 | A | 525 | A | 526 | U | 527 | A | 528 | C | 529 | C | 530 | U | 531 | cWW | ncWWa | tSH | |
| 2 | HL_4V88_199 | 4V88 | 0.0000 | 0 | A6 | SSU rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | tSH | |
| 3 | HL_5A2Q_012 | 5A2Q | 0.1312 | 0 | 2 | SSU rRNA | A | 569 | C | 570 | U | 571 | U | 572 | U | 573 | A | 574 | A | 575 | A | 576 | U | 577 | C | 578 | C | 579 | U | 580 | U | 581 | cWW | ncWW | tSH | |
| 4 | HL_4WFL_001 | 4WFL | 0.2338 | 0 | A | LSRP RNA | G | 19 | A | 20 | G | 21 | G | 22 | U | 23 | A | 24 | G | 25 | C | 26 | G | 27 | G | 28 | U | 29 | G | 30 | C | 31 | cWW | cWW | tSH | ntSHa |
| 5 | HL_5GAP_001 | 5GAP | 0.6768 | 0 | U | U5 snRNA | U | 91 | U | 92 | G | 93 | C | 94 | C | 95 | U | 96 | U | 97 | U | 98 | U | 99 | A | 100 | C | 101 | C | 102 | A | 103 | cWW | ncWW | ||
| 6 | HL_5GAN_001 | 5GAN | 0.7100 | 0 | U | U5 snRNA | U | 91 | U | 92 | G | 93 | C | 94 | C | 95 | U | 96 | U | 97 | U | 98 | U | 99 | A | 100 | C | 101 | C | 102 | A | 103 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUGUAAAUACCU | 2 |
| UUGCCUUUUACCA | 2 |
| ACUUUAAAUCCUU | 1 |
| GAGGUAGCGGUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGUAAAUACC | 2 |
| UGCCUUUUACC | 2 |
| CUUUAAAUCCU | 1 |
| AGGUAGCGGUG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-R-tSH-R-tSH-R-R
- Heat map statistics
- Min 0.11 | Avg 0.37 | Max 0.73
Coloring options: