HL_3JAM_019

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48953.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

4

Unit IDs

3JAM|1|2|A|828
3JAM|1|2|U|829
3JAM|1|2|U|830
3JAM|1|2|U|831
3JAM|1|2|U|832
3JAM|1|2|G|833
3JAM|1|2|U|834
3JAM|1|2|U|835
3JAM|1|2|G|836
3JAM|1|2|G|837
3JAM|1|2|U|838
3JAM|1|2|U|839
3JAM|1|2|U|840
3JAM|1|2|C|841
3JAM|1|2|U|842

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain L

uS17