Motif HL_48953.1 Version HL_48953.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-12 | 6-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3JAM_019 | 3JAM | 0.3216 | 0 | Pseudoknot geometry (H) | 2 | SSU rRNA | A | 828 | U | 829 | U | 830 | U | 831 | U | 832 | G | 833 | U | 834 | U | 835 | G | 836 | G | 837 | U | 838 | U | 839 | U | 840 | C | 841 | U | 842 | cWW | ||||
| 2 | HL_4V88_205 | 4V88 | 0.0000 | 0 | Pseudoknot geometry | A6 | SSU rRNA | A | 829 | U | 830 | U | 831 | U | 832 | U | 833 | G | 834 | U | 835 | U | 836 | G | 837 | G | 838 | U | 839 | U | 840 | U | 841 | C | 842 | U | 843 | cWW | ||||
| 3 | HL_5IT9_040 | 5IT9 | 0.8106 | 0 | i | CrPV IRES | C | 6181 | A | 6182 | G | 6183 | A | 6184 | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | C | 6194 | G | 6195 | cWW | cWWa | ncWWa | ncWW | ||
| 4 | HL_4V91_034 | 4V91 | 0.9904 | 1 | 1 | LSU rRNA | C | 1562 | C | 1563 | U | 1564 | G | 1565 | A | 1566 | U | 1567 | U | 1568 | U | 1570 | A | 1571 | U | 1572 | G | 1573 | C | 1574 | A | 1575 | G | 1576 | G | 1577 | ncWW | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUUUGUUGGUUUCU | 2 |
| CAGAUUAGGUAGUCG | 1 |
| CCUGAUUUUAUGCAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUGUUGGUUUC | 2 |
| AGAUUAGGUAGUC | 1 |
| CUGAUUUUAUGCAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Pseudoknot geometry (H) (1)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.32 | Avg 0.60 | Max 0.99
Coloring options: