HL_3JAM_027

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AGAUUGAGAGCUCU

Length

14 nucleotides

Bulged bases

3JAM|1|2|G|1242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96296.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3JAM|1|2|A|1235
3JAM|1|2|G|1236
3JAM|1|2|A|1237
3JAM|1|2|U|1238
3JAM|1|2|U|1239
3JAM|1|2|G|1240
3JAM|1|2|A|1241
3JAM|1|2|G|1242
3JAM|1|2|A|1243
3JAM|1|2|G|1244
3JAM|1|2|C|1245
3JAM|1|2|U|1246
3JAM|1|2|C|1247
3JAM|1|2|U|1248

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain d

uS14

Chain f

eS31