HL_3JAM_032

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAM_032 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.5123

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAM|1|2|C|1499
3JAM|1|2|G|1500
3JAM|1|2|A|1501
3JAM|1|2|G|1502
3JAM|1|2|A|1503
3JAM|1|2|G|1504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain S

uS13

Chain T

eS19