HL_3JAN_012

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

3JAN|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_012 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3211

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

3JAN|1|5|U|204
3JAN|1|5|C|205
3JAN|1|5|U|206
3JAN|1|5|G|207
3JAN|1|5|A|208
3JAN|1|5|U|209
3JAN|1|5|C|210
3JAN|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein uL24

Chain e

Ribosomal protein eL32