RNA 3D Hub //

3JAN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3JAN_0011/3/12:23No text annotation
homologous
HL_5E6M_001
HL_99769.3
HL_3JAN_0021/3/30:40No text annotation
homologous
HL_5IB8_208
HL_36684.4
HL_3JAN_0031/3/53:61T-loop with 2 stacked bulged bases
homologous
HL_3ZGZ_003
HL_28252.8
HL_3JAN_0041/4/10:17GNRA wlth tandem sheared
geometric
HL_1E8O_001
HL_81538.2
HL_3JAN_0051/4/31:40No text annotation
geometric
HL_1E8O_002
HL_73255.1
HL_3JAN_1181/4/64:283No text annotation
geometric
HL_1KH6_003
HL_27483.1
HL_3JAN_0061/4/146:151GNRA variation
homologous
HL_1MFQ_001
HL_37824.7
HL_3JAN_0071/4/197:202GNRA
homologous
HL_1MFQ_002
HL_37824.7
HL_3JAN_0081/5/30:52No text annotation
HL_3JAN_0091/5/68:73No text annotation
homologous
HL_5TBW_002
NA
HL_3JAN_1191/5/81:102No text annotation
HL_3JAN_0101/5/89:95No text annotation
HL_3JAN_0111/5/131:137No text annotation
homologous
HL_8C3A_004
NA
HL_3JAN_0121/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_3JAN_0131/5/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_3JAN_0141/5/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_3JAN_1201/5/286:300No text annotation
HL_3JAN_0151/5/289:298No text annotation
HL_3JAN_0161/5/314:323Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_3JAN_0171/5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_3JAN_0181/5/393:398GNRA
homologous
HL_5TBW_011
NA
HL_3JAN_1221/5/996:1047No text annotation
HL_3JAN_1231/5/1172:1189No text annotation
HL_3JAN_0191/5/1178:1183GNRA
geometric
HL_6JQ5_004
HL_37824.7
HL_3JAN_0201/5/1252:1258GNRA
geometric
HL_4LFB_012
HL_37824.7
HL_3JAN_0211/5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_3JAN_0221/5/1364:1373No text annotation
HL_3JAN_0231/5/1406:1411No text annotation
HL_3JAN_0241/5/1436:1448No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_3JAN_0251/5/1479:1486No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_3JAN_0261/5/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_3JAN_0271/5/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_3JAN_0281/5/1626:1636No text annotation
HL_3JAN_0291/5/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_3JAN_0301/5/1763:1769GNRA
homologous
HL_5TBW_023
NA
HL_3JAN_0311/5/1814:1823No text annotation
HL_3JAN_1371/5/1864:1870GNRA
homologous
HL_8P9A_137
HL_37824.7
HL_3JAN_0331/5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_3JAN_1241/5/1978:1988No text annotation
geometric
HL_4V88_198
NA
HL_3JAN_0351/5/2006:2013GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_3JAN_0361/5/2130:2244Mini UNCG
geometric
HL_8C3A_198
NA
HL_3JAN_0371/5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_3JAN_0381/5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_3JAN_0391/5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_3JAN_0401/5/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_3JAN_0411/5/2487:2491No text annotation
HL_3JAN_0421/5/2523:2532No text annotation
geometric
HL_5TBW_035
NA
HL_3JAN_1261/5/2558:2569No text annotation
HL_3JAN_0431/5/2559:2568No text annotation
HL_3JAN_0441/5/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_3JAN_0451/5/2623:2632No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_3JAN_0461/5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_3JAN_0471/5/2705:2710No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_3JAN_0481/5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_3JAN_0491/5/2792:2799No text annotation
homologous
HL_8C3A_041
NA
HL_3JAN_1271/5/2809:2817Anticodon loop related
geometric
HL_4V9F_032
HL_77082.1
HL_3JAN_0501/5/2810:2816GNRA
homologous
HL_8P9A_153
HL_37824.7
HL_3JAN_0511/5/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_3JAN_1281/5/2910:3584No text annotation
HL_3JAN_0521/5/3614:3618No text annotation
homologous
HL_5TBW_045
NA
HL_3JAN_0531/5/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_3JAN_0541/5/3667:3675No text annotation
geometric
HL_2Y9H_005
HL_86870.2
HL_3JAN_1291/5/3708:3742No text annotation
HL_3JAN_0551/5/3723:3729No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_3JAN_0561/5/3757:3767No text annotation
homologous
HL_5TBW_049
NA
HL_3JAN_1301/5/3781:3811No text annotation
HL_3JAN_0571/5/3795:3805No text annotation
HL_3JAN_0581/5/3873:3882No text annotation
homologous
HL_5TBW_051
NA
HL_3JAN_0591/5/3948:4065No text annotation
geometric
HL_5AMQ_001
HL_48417.5
HL_3JAN_0601/5/4102:4107UNCG
geometric
HL_4LGT_001
HL_34617.5
HL_3JAN_0611/5/4139:4145No text annotation
geometric
HL_4V88_204
NA
HL_3JAN_0621/5/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_3JAN_0631/5/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_3JAN_0641/5/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_3JAN_0651/5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_3JAN_0661/5/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_3JAN_0671/5/4352:4362No text annotation
geometric
HL_4V83_139
NA
HL_3JAN_0681/5/4417:4425No text annotation
homologous
HL_8C3A_062
NA
HL_3JAN_0691/5/4473:4481No text annotation
geometric
HL_7RQB_057
NA
HL_3JAN_0701/5/4495:4505No text annotation
HL_3JAN_0711/5/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_3JAN_0721/5/4603:4608GNRA
geometric
HL_3LQX_001
HL_37824.7
HL_3JAN_0731/5/4644:4653No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_3JAN_1381/5/4689:4701No text annotation
HL_3JAN_0751/5/4907:4914No text annotation
HL_3JAN_0761/5/4972:4986No text annotation
HL_3JAN_0771/5/5021:5028No text annotation
geometric
HL_5ID6_001
HL_69752.2
HL_3JAN_0781/7/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_3JAN_0791/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_3JAN_0801/8/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_93438.2
HL_3JAN_0811/8/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_3JAN_0821/8/107:112No text annotation
homologous
HL_8P9A_188
HL_53890.2
HL_3JAN_0831/8/121:129No text annotation
geometric
HL_4V88_194
NA
HL_3JAN_1391/S2/7:17No text annotation
homologous
HL_8CRE_191
HL_89881.5
HL_3JAN_0851/S2/69:80No text annotation
HL_3JAN_0861/S2/152:166No text annotation
HL_3JAN_0871/S2/197:202GNRA
geometric
HL_5J7L_007
HL_37824.7
HL_3JAN_0881/S2/288:295No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_3JAN_0891/S2/322:329No text annotation
geometric
HL_5TBW_018
NA
HL_3JAN_0901/S2/376:388No text annotation
HL_3JAN_0911/S2/415:423No text annotation
HL_3JAN_0921/S2/441:452No text annotation
homologous
HL_4V88_195
NA
HL_3JAN_0931/S2/462:467UNCG
homologous
HL_4V88_196
NA
HL_3JAN_1321/S2/495:508No text annotation
HL_3JAN_0941/S2/498:504No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_3JAN_0951/S2/539:544GNRA
geometric
HL_5J7L_007
HL_37824.7
HL_3JAN_0961/S2/566:584No text annotation
geometric
HL_8C3A_054
NA
HL_3JAN_1331/S2/601:621No text annotation
HL_3JAN_0971/S2/617:624No text annotation
HL_3JAN_1341/S2/698:732No text annotation
HL_3JAN_1001/S2/833:841No text annotation
HL_3JAN_1011/S2/885:901No text annotation
geometric
HL_6UFM_001
HL_04642.1
HL_3JAN_1021/S2/956:967No text annotation
HL_3JAN_1031/S2/1054:1064No text annotation
geometric
HL_5J7L_017
HL_75293.5
HL_3JAN_1041/S2/1108:1124No text annotation
HL_3JAN_1051/S2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_3JAN_1061/S2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_3JAN_1071/S2/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_3JAN_1351/S2/1280:1317No text annotation
HL_3JAN_1081/S2/1291:1307No text annotation
HL_3JAN_1091/S2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_3JAN_1101/S2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_3JAN_1361/S2/1420:1427tRNA anticodon loop
geometric
HL_3RG5_006
HL_04259.3
HL_3JAN_1111/S2/1421:1426No text annotation
HL_3JAN_1121/S2/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_3JAN_1131/S2/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_3JAN_1141/S2/1614:1625No text annotation
homologous
HL_4V88_219
NA
HL_3JAN_1401/S2/1657:1667No text annotation
HL_3JAN_1411/S2/1761:1771No text annotation
HL_3JAN_1171/S2/1847:1852GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_3JAN_121No text annotation
HL_3JAN_032tRNA anticodon loop
HL_3JAN_034No text annotation
HL_3JAN_125No text annotation
HL_3JAN_074No text annotation
HL_3JAN_131No text annotation
HL_3JAN_084No text annotation
HL_3JAN_098No text annotation
HL_3JAN_099No text annotation
HL_3JAN_115No text annotation
HL_3JAN_116No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3JAN_0011/4/52:54,
1/4/292:294		No text annotation
geometric
IL_1L9A_003
NA
IL_3JAN_0021/4/55:60,
1/4/287:291		No text annotation
IL_3JAN_2431/4/116:122,
1/4/228:235		No text annotation
IL_3JAN_0031/4/116:123,
1/4/227:235		No text annotation
IL_3JAN_0041/4/132:134,
1/4/163:165		Isolated non-canonical cWW pair
homologous
IL_1MFQ_003
IL_87907.2
IL_3JAN_0051/4/138:141,
1/4/156:159		Tandem non-canonical cWW pairs
homologous
IL_1MFQ_004
IL_85033.2
IL_3JAN_0061/4/175:177,
1/4/220:221		Single bulged A
geometric
IL_1MFQ_005
IL_31462.6
IL_3JAN_0071/4/181:187,
1/4/212:216		No text annotation
IL_3JAN_0081/4/190:195,
1/4/204:209		tSH-tHW-tHS-cWW
homologous
IL_1MFQ_007
IL_76308.6
IL_3JAN_0091/5/6:7,
1/8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_3JAN_3081/5/11:14,
1/8/143:145		Isolated non-canonical cWW pair
geometric
IL_4KNQ_003
IL_87907.2
IL_3JAN_0101/5/12:14,
1/8/143:144		Single bulged U
homologous
IL_8P9A_232
IL_89505.4
IL_3JAN_0111/5/16:18,
1/8/139:141		Isolated non-canonical cWW pair
geometric
IL_1Z7F_006
IL_87907.2
IL_3JAN_0121/5/26:29,
1/5/53:58		No text annotation
IL_3JAN_0131/5/81:88,
1/5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_3JAN_0141/5/117:122,
1/5/147:154		No text annotation
IL_3JAN_0151/5/124:126,
1/5/142:145		No text annotation
IL_3JAN_3091/5/124:127,
1/5/141:145		No text annotation
geometric
IL_8CRE_434
IL_85033.2
IL_3JAN_0161/5/160:162,
1/5/273:276		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_3JAN_0171/5/168:173,
1/5/263:267		No text annotation
IL_3JAN_0181/5/180:182,
1/5/255:256		No text annotation
IL_3JAN_2461/5/180:184,
1/5/253:256		No text annotation
geometric
IL_1GID_008
NA
IL_3JAN_0191/5/184:189,
1/5/252:253		No text annotation
IL_3JAN_0201/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_3JAN_0211/5/285:286,
1/5/300:302		Not an internal loop
geometric
IL_4UYK_002
NA
IL_3JAN_0221/5/286:288,
1/5/299:300		No text annotation
IL_3JAN_0231/5/339:342,
1/8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_3JAN_0241/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_3JAN_0251/5/387:390,
1/5/401:414		No text annotation
homologous
IL_8C3A_015
NA
IL_3JAN_0261/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
geometric
IL_4V9F_001
IL_04021.2
IL_3JAN_0271/5/443:446,
1/5/1300:1304		No text annotation
IL_3JAN_0281/5/459:460,
1/5/695:697		Single bulged C
geometric
IL_1KUQ_002
IL_61258.15
IL_3JAN_0291/5/462:464,
1/5/691:693		Isolated non-canonical cWW pair
geometric
IL_5ED1_002
IL_87907.2
IL_3JAN_3101/5/464:473,
1/5/681:691		No text annotation
IL_3JAN_0301/5/482:487,
1/5/669:672		No text annotation
geometric
IL_1HYS_004
IL_64231.5
IL_3JAN_0311/5/488:496,
1/5/657:668		No text annotation
IL_3JAN_0321/5/497:499,
1/5/655:656		No text annotation
IL_3JAN_0331/5/500:505,
1/5/653:654		Single stack bend
geometric
IL_4V9F_005
IL_90729.1
IL_3JAN_0341/5/508:510,
1/5/649:650		Single bulged A
geometric
IL_1U63_004
IL_31462.6
IL_3JAN_2501/5/512:515,
1/5/646:647		Multiple bulged bases
geometric
IL_3MXH_004
IL_82107.4
IL_3JAN_0361/5/708:709,
1/5/1287:1289		No text annotation
IL_3JAN_0371/5/722:724,
1/5/942:946		No text annotation
IL_3JAN_0381/5/726:731,
1/5/938:940		No text annotation
IL_3JAN_0391/5/731:735,
1/5/928:938		No text annotation
IL_3JAN_3111/5/737:739,
1/5/925:926		Single stack bend
geometric
IL_4V84_420
IL_10569.1
IL_3JAN_0411/5/740:742,
1/5/922:924		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_3JAN_0421/5/745:750,
1/5/912:919		No text annotation
IL_3JAN_2521/5/745:755,
1/5/908:919		No text annotation
IL_3JAN_0431/5/750:755,
1/5/908:912		No text annotation
IL_3JAN_0441/5/989:992,
1/5/1051:1064		No text annotation
IL_3JAN_0451/5/1074:1079,
1/5/1221:1236		No text annotation
IL_3JAN_0461/5/1081:1082,
1/5/1217:1219		No text annotation
IL_3JAN_3121/5/1082:1084,
1/5/1213:1217		No text annotation
IL_3JAN_0481/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_7KGA_001
IL_61258.15
IL_3JAN_2541/5/1094:1097,
1/5/1198:1202		No text annotation
geometric
IL_1HYS_004
IL_64231.5
IL_3JAN_0491/5/1097:1098,
1/5/1197:1199		Multiple bulged bases
geometric
IL_7Q80_001
IL_84476.1
IL_3JAN_0501/5/1172:1177,
1/5/1184:1189		No text annotation
IL_3JAN_0511/5/1357:1361,
1/5/1376:1382		No text annotation
IL_3JAN_0521/5/1425:1429,
1/5/1455:1460		No text annotation
IL_3JAN_0531/5/1431:1434,
1/5/1450:1453		Double sheared
geometric
IL_1SAQ_002
NA
IL_3JAN_0541/5/1467:1468,
1/5/1496:1498		Single bulged A
geometric
IL_8C3A_026
NA
IL_3JAN_0551/5/1474:1478,
1/5/1487:1490		No text annotation
IL_3JAN_0561/5/1520:1526,
1/5/1648:1657		No text annotation
IL_3JAN_0571/5/1550:1551,
1/5/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_3JAN_0581/5/1551:1555,
1/5/1572:1576		Triple sheared
geometric
IL_5TBW_030
NA
IL_3JAN_0591/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_3JAN_0601/5/1590:1592,
1/5/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_3JAN_0611/5/1624:1626,
1/5/1636:1640		No text annotation
IL_3JAN_0621/5/1672:1674,
1/5/1681:1682		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_3JAN_0631/5/1686:1688,
1/5/1848:1851		No text annotation
IL_3JAN_0641/5/1732:1737,
1/5/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_3JAN_0651/5/1737:1738,
1/5/1790:1792		Minor groove platform
homologous
IL_8C3A_042
NA
IL_3JAN_0661/5/1739:1744,
1/5/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_3JAN_0671/5/1746:1749,
1/5/1781:1784		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_3JAN_2581/5/1746:1751,
1/5/1779:1784		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.1
IL_3JAN_0681/5/1749:1751,
1/5/1779:1781		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_3JAN_0691/5/1751:1759,
1/5/1773:1779		No text annotation
IL_3JAN_0701/5/1761:1763,
1/5/1769:1771		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_87907.2
IL_3JAN_0711/5/1858:1860,
1/5/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_3JAN_0731/5/1905:1909,
1/5/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_3JAN_0741/5/1911:1918,
1/5/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_3JAN_0751/5/1918:1920,
1/5/2063:2064		No text annotation
IL_3JAN_0761/5/1920:1922,
1/5/2062:2063		No text annotation
IL_3JAN_0771/5/1924:1933,
1/5/2053:2060		No text annotation
IL_3JAN_0781/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_3JAN_0791/5/1945:1950,
1/5/2033:2037		No text annotation
IL_3JAN_0801/5/1957:1965,
1/5/2022:2026		No text annotation
IL_3JAN_2611/5/1957:1968,
1/5/2019:2026		No text annotation
IL_3JAN_0811/5/1973:1977,
1/5/1989:1993		No text annotation
homologous
IL_8C3A_058
NA
IL_3JAN_0821/5/2001:2005,
1/5/2014:2016		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_3JAN_2621/5/2081:2086,
1/5/2271:2275		Partly complementary
geometric
IL_7VYX_004
IL_49751.4
IL_3JAN_0831/5/2083:2085,
1/5/2272:2273		No text annotation
IL_3JAN_2631/5/2087:2128,
1/5/2246:2270		No text annotation
IL_3JAN_0841/5/2290:2294,
1/5/2340:2345		Partly complementary
geometric
IL_7VYX_008
IL_49751.4
IL_3JAN_0851/5/2299:2301,
1/5/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_3JAN_0861/5/2302:2309,
1/5/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_3JAN_0871/5/2310:2314,
1/5/2325:2328		No text annotation
IL_3JAN_2651/5/2310:2315,
1/5/2324:2328		No text annotation
IL_3JAN_0881/5/2358:2364,
1/5/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_3JAN_0891/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_3JAN_0901/5/2446:2450,
1/5/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_3JAN_0911/5/2477:2479,
1/5/2499:2500		Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_3JAN_0921/5/2542:2547,
1/5/2772:2774		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_3JAN_0931/5/2589:2593,
1/5/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_3JAN_2661/5/2597:2606,
1/5/2733:2748		No text annotation
IL_3JAN_0941/5/2613:2614,
1/5/2724:2726		Single bulged C
homologous
IL_8C3A_075
NA
IL_3JAN_0951/5/2614:2615,
1/5/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_3JAN_0961/5/2622:2623,
1/5/2632:2634		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_3JAN_0971/5/2642:2648,
1/5/2685:2692		No text annotation
IL_3JAN_0981/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_7D7W_002
IL_00225.13
IL_3JAN_3131/5/2655:2662,
1/5/2672:2679		No text annotation
IL_3JAN_0991/5/2656:2662,
1/5/2672:2678		No text annotation
IL_3JAN_2691/5/2702:2705,
1/5/2710:2714		Tandem non-canonical cWW pairs
geometric
IL_4EYA_010
IL_51479.1
IL_3JAN_1001/5/2704:2705,
1/5/2710:2712		No text annotation
IL_3JAN_1011/5/2832:2838,
1/5/3850:3853		No text annotation
homologous
IL_5TBW_074
NA
IL_3JAN_2701/5/2840:2846,
1/5/3842:3848		No text annotation
IL_3JAN_1021/5/2844:2846,
1/5/3842:3844		Isolated tWW turn
geometric
IL_5J7L_305
IL_67095.2
IL_3JAN_1031/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_3JAN_2711/5/2847:2855,
1/5/3837:3841		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_3JAN_1041/5/2850:2855,
1/5/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_3JAN_1051/5/2867:2872,
1/5/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.2
IL_3JAN_1061/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_3JAN_2721/5/2893:2897,
1/5/3602:3608		No text annotation
IL_3JAN_1071/5/2894:2897,
1/5/3602:3607		No text annotation
IL_3JAN_1081/5/2901:2905,
1/5/3589:3598		No text annotation
IL_3JAN_3141/5/3629:3633,
1/5/3827:3832		Triple non-canonical cWW pairs
geometric
IL_8VMB_003
IL_49751.4
IL_3JAN_1091/5/3632:3633,
1/5/3827:3829		Single bulged A
geometric
IL_4V9F_064
IL_31462.6
IL_3JAN_1101/5/3660:3665,
1/5/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_3JAN_1111/5/3700:3703,
1/5/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_3JAN_1121/5/3704:3705,
1/5/3745:3748		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_3JAN_1131/5/3780:3781,
1/5/3811:3814		Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_3JAN_1141/5/3781:3795,
1/5/3805:3811		No text annotation
IL_3JAN_1151/5/3895:3898,
1/5/4563:4565		Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_3JAN_2741/5/3895:3902,
1/5/4558:4565		No text annotation
IL_3JAN_1161/5/3898:3902,
1/5/4558:4563		No text annotation
IL_3JAN_1171/5/3913:3915,
1/5/4388:4389		Single bulged U
homologous
IL_5TBW_093
NA
IL_3JAN_1181/5/3916:3917,
1/5/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_3JAN_1191/5/3927:3929,
1/5/4181:4184		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_3JAN_1201/5/4095:4098,
1/5/4111:4113		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_3JAN_1211/5/4191:4192,
1/5/4202:4204		Single bulged A
homologous
IL_5TBW_098
NA
IL_3JAN_1221/5/4238:4243,
1/5/4267:4286		No text annotation
IL_3JAN_1231/5/4243:4245,
1/5/4263:4267		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_3JAN_1241/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_3JAN_1251/5/4295:4298,
1/5/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_3JAN_1261/5/4347:4351,
1/5/4363:4365		No text annotation
geometric
IL_8C3A_419
NA
IL_3JAN_1271/5/4401:4403,
1/5/4440:4442		Isolated non-canonical cWW pair
homologous
IL_8P9A_330
IL_87907.2
IL_3JAN_1281/5/4403:4405,
1/5/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_3JAN_1291/5/4405:4407,
1/5/4435:4439		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_3JAN_1301/5/4412:4416,
1/5/4426:4430		Triple sheared
homologous
IL_5TBW_106
NA
IL_3JAN_1311/5/4453:4454,
1/5/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_3JAN_3151/5/4455:4458,
1/5/4520:4525		Tandem non-canonical cWW pairs
geometric
IL_5EW4_001
IL_43644.1
IL_3JAN_1321/5/4456:4458,
1/5/4520:4524		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_3JAN_1331/5/4458:4459,
1/5/4517:4520		No text annotation
homologous
IL_8C3A_117
NA
IL_3JAN_1341/5/4472:4473,
1/5/4481:4483		No text annotation
IL_3JAN_1351/5/4534:4538,
1/5/4547:4552		No text annotation
IL_3JAN_1361/5/4577:4579,
1/5/4723:4726		No text annotation
geometric
IL_8C3A_419
NA
IL_3JAN_1371/5/4579:4582,
1/5/4721:4723		No text annotation
IL_3JAN_1381/5/4582:4585,
1/5/4717:4721		Double sheared
homologous
IL_8C3A_123
NA
IL_3JAN_1391/5/4590:4592,
1/5/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_3JAN_1401/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_3JAN_1411/5/4624:4629,
1/5/4669:4673		No text annotation
IL_3JAN_1421/5/4631:4637,
1/5/4662:4667		No text annotation
IL_3JAN_1431/5/4638:4640,
1/5/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10167.6
IL_3JAN_2781/5/4638:4642,
1/5/4655:4661		No text annotation
IL_3JAN_1441/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_3JAN_1451/5/4681:4685,
1/5/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_3JAN_2791/5/4740:4746,
1/5/4954:4959		No text annotation
IL_3JAN_2801/5/4755:4765,
1/5/4869:4878		No text annotation
IL_3JAN_1481/5/4768:4772,
1/5/4863:4866		Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_77658.1
IL_3JAN_1491/5/4891:4896,
1/5/4924:4928		No text annotation
IL_3JAN_1501/5/4899:4901,
1/5/4920:4921		No text annotation
IL_3JAN_3161/5/4992:4994,
1/5/5057:5059		Isolated non-canonical cWW pair
geometric
IL_4RBZ_002
IL_87907.2
IL_3JAN_1521/5/4996:4999,
1/5/5051:5055		No text annotation
IL_3JAN_3171/5/4996:5010,
1/5/5038:5055		No text annotation
IL_3JAN_1531/5/5012:5014,
1/5/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_3JAN_1541/5/5014:5017,
1/5/5032:5035		Double sheared
geometric
IL_4V9F_100
IL_09705.15
IL_3JAN_1551/7/15:16,
1/7/62:64		Single bulged A
homologous
IL_8P9A_364
IL_31462.6
IL_3JAN_2821/7/15:18,
1/7/60:64		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_85033.2
IL_3JAN_1561/7/21:27,
1/7/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_3JAN_3181/7/21:29,
1/7/48:57		No text annotation
IL_3JAN_1571/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_357
IL_68140.4
IL_3JAN_1581/7/32:36,
1/7/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_3JAN_1591/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_3JAN_1601/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4Y1M_005
IL_07785.1
IL_3JAN_1611/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_3JAN_1621/S2/23:29,
1/S2/645:651		No text annotation
IL_3JAN_1631/S2/34:36,
1/S2/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_3JAN_1641/S2/37:40,
1/S2/514:518		Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_3JAN_1651/S2/41:47,
1/S2/479:481		No text annotation
homologous
IL_4V88_387
NA
IL_3JAN_2841/S2/62:68,
1/S2/81:86		No text annotation
IL_3JAN_1661/S2/63:68,
1/S2/81:85		No text annotation
IL_3JAN_1671/S2/108:110,
1/S2/351:353		Isolated non-canonical cWW pair
geometric
IL_2O3V_001
IL_28037.2
IL_3JAN_1681/S2/110:112,
1/S2/349:351		Isolated non-canonical cWW pair
geometric
IL_8C3A_118
NA
IL_3JAN_2851/S2/110:115,
1/S2/348:351		No text annotation
homologous
IL_8P9A_380
IL_77658.1
IL_3JAN_1691/S2/112:115,
1/S2/348:349		Multiple bulged bases
geometric
IL_8C3A_400
NA
IL_3JAN_1701/S2/116:121,
1/S2/343:347		No text annotation
geometric
IL_8C3A_401
NA
IL_3JAN_1711/S2/123:124,
1/S2/339:341		Not an internal loop
geometric
IL_4UYK_002
NA
IL_3JAN_1721/S2/145:151,
1/S2/167:174		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_3JAN_1731/S2/188:192,
1/S2/207:211		Triple sheared
geometric
IL_4WFL_001
IL_17948.2
IL_3JAN_1741/S2/218:220,
1/S2/301:302		No text annotation
IL_3JAN_2871/S2/218:223,
1/S2/298:302		No text annotation
IL_3JAN_1751/S2/223:288,
1/S2/295:298		No text annotation
IL_3JAN_1761/S2/317:320,
1/S2/331:333		No text annotation
homologous
IL_4V88_400
NA
IL_3JAN_2881/S2/358:364,
1/S2/396:404		No text annotation
IL_3JAN_1771/S2/359:364,
1/S2/396:403		No text annotation
IL_3JAN_1781/S2/366:371,
1/S2/393:394		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_3JAN_1791/S2/411:413,
1/S2/424:429		No text annotation
homologous
IL_8C3A_412
NA
IL_3JAN_1801/S2/413:415,
1/S2/423:424		Single stack bend
geometric
IL_5TBW_070
NA
IL_3JAN_1811/S2/437:439,
1/S2/454:456		Isolated cWH basepair
geometric
IL_5F5F_001
IL_10167.6
IL_3JAN_1821/S2/487:489,
1/S2/511:512		Single bulged U
geometric
IL_4LFB_014
IL_89505.4
IL_3JAN_1831/S2/491:495,
1/S2/508:509		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_3JAN_1841/S2/495:496,
1/S2/506:508		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_3JAN_1851/S2/528:530,
1/S2/554:557		Isolated non-canonical cWW contact
geometric
IL_5UNE_009
IL_44465.1
IL_3JAN_2911/S2/531:537,
1/S2/546:553		No text annotation
IL_3JAN_1871/S2/596:597,
1/S2/639:641		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_3JAN_1881/S2/599:610,
1/S2/633:637		No text annotation
IL_3JAN_2921/S2/599:600,
1/S2/622:637		No text annotation
IL_3JAN_1891/S2/610:617,
1/S2/624:633		No text annotation
IL_3JAN_1901/S2/663:665,
1/S2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_3JAN_2931/S2/663:671,
1/S2/1161:1164		No text annotation
IL_3JAN_1911/S2/665:671,
1/S2/1161:1162		Major groove intercalation
geometric
IL_1NBS_009
IL_82107.4
IL_3JAN_1921/S2/673:675,
1/S2/1030:1032		Isolated non-canonical cWW pair
geometric
IL_1KFO_003
NA
IL_3JAN_3191/S2/673:680,
1/S2/1025:1032		No text annotation
IL_3JAN_1931/S2/676:680,
1/S2/1025:1029		tSH-tHW-tHS
geometric
IL_8C3A_428
NA
IL_3JAN_2951/S2/801:807,
1/S2/856:864		No text annotation
IL_3JAN_1941/S2/802:803,
1/S2/860:863		No text annotation
IL_3JAN_1951/S2/803:807,
1/S2/856:860		Triple non-canonical cWW pairs
geometric
IL_8VMB_003
IL_49751.4
IL_3JAN_1961/S2/807:815,
1/S2/849:856		No text annotation
homologous
IL_4V88_425
NA
IL_3JAN_2961/S2/815:831,
1/S2/843:849		No text annotation
IL_3JAN_1971/S2/816:831,
1/S2/843:848		No text annotation
IL_3JAN_3201/S2/874:879,
1/S2/907:911		Partly complementary
geometric
IL_8D29_010
IL_49751.4
IL_3JAN_1991/S2/922:923,
1/S2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_3JAN_2001/S2/923:927,
1/S2/1014:1019		Partly complementary
geometric
IL_6CZR_167
NA
IL_3JAN_2971/S2/924:931,
1/S2/1010:1018		No text annotation
IL_3JAN_2011/S2/928:931,
1/S2/1010:1013		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_3JAN_2021/S2/931:935,
1/S2/1007:1010		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_3JAN_2031/S2/938:941,
1/S2/985:1004		No text annotation
IL_3JAN_2041/S2/943:945,
1/S2/981:983		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_87907.2
IL_3JAN_2981/S2/945:956,
1/S2/967:981		No text annotation
IL_3JAN_2051/S2/951:956,
1/S2/967:975		Kink-turn
geometric
IL_4LFB_031
IL_95727.1
IL_3JAN_2061/S2/1042:1047,
1/S2/1071:1073		Other IL
geometric
IL_4V88_435
NA
IL_3JAN_2071/S2/1047:1054,
1/S2/1064:1071		No text annotation
IL_3JAN_2081/S2/1098:1103,
1/S2/1129:1134		No text annotation
geometric
IL_5TBW_476
NA
IL_3JAN_2091/S2/1168:1176,
1/S2/1185:1191		8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
geometric
IL_4V9F_012
IL_59724.1
IL_3JAN_3211/S2/1168:1178,
1/S2/1183:1191		No text annotation
IL_3JAN_2101/S2/1201:1206,
1/S2/1692:1697		No text annotation
IL_3JAN_2111/S2/1206:1208,
1/S2/1691:1692		Single bulged G
geometric
IL_5J7L_040
IL_00225.13
IL_3JAN_2121/S2/1214:1217,
1/S2/1681:1685		C-loop
homologous
IL_4V88_443
NA
IL_3JAN_2131/S2/1222:1223,
1/S2/1643:1645		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_3JAN_2141/S2/1230:1233,
1/S2/1525:1528		No text annotation
IL_3JAN_3021/S2/1230:1235,
1/S2/1523:1528		No text annotation
geometric
IL_5TBW_476
NA
IL_3JAN_2151/S2/1235:1236,
1/S2/1521:1523		Minor groove platform
homologous
IL_4V88_445
NA
IL_3JAN_2161/S2/1280:1291,
1/S2/1307:1317		No text annotation
IL_3JAN_2171/S2/1325:1327,
1/S2/1502:1503		Single bulged U
homologous
IL_4V88_449
NA
IL_3JAN_2181/S2/1329:1333,
1/S2/1498:1500		Isolated cWS basepair
homologous
IL_4V88_450
NA
IL_3JAN_3031/S2/1329:1335,
1/S2/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_3JAN_2191/S2/1333:1335,
1/S2/1492:1498		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_3JAN_2201/S2/1337:1340,
1/S2/1486:1490		Tandem non-canonical cWW pairs
geometric
IL_1D4R_003
IL_85033.2
IL_3JAN_2211/S2/1347:1349,
1/S2/1380:1382		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_3JAN_2221/S2/1402:1405,
1/S2/1441:1444		Minor groove platform
homologous
IL_4V88_456
NA
IL_3JAN_2231/S2/1407:1413,
1/S2/1433:1439		No text annotation
IL_3JAN_2241/S2/1415:1419,
1/S2/1428:1431		No text annotation
IL_3JAN_2251/S2/1453:1456,
1/S2/1470:1475		No text annotation
IL_3JAN_3041/S2/1541:1550,
1/S2/1582:1592		No text annotation
IL_3JAN_2261/S2/1550:1558,
1/S2/1577:1582		No text annotation
IL_3JAN_2271/S2/1560:1563,
1/S2/1572:1575		Tandem non-canonical cWW pairs
geometric
IL_1JID_002
IL_85033.2
IL_3JAN_2281/S2/1604:1610,
1/S2/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_3JAN_2291/S2/1700:1702,
1/S2/1833:1836		No text annotation
homologous
IL_4V88_463
NA
IL_3JAN_2301/S2/1702:1705,
1/S2/1829:1833		No text annotation
geometric
IL_4V88_464
NA
IL_3JAN_2311/S2/1706:1708,
1/S2/1826:1828		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_3JAN_2321/S2/1708:1711,
1/S2/1822:1826		No text annotation
IL_3JAN_2331/S2/1714:1716,
1/S2/1817:1819		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_3JAN_2341/S2/1717:1720,
1/S2/1813:1816		Double sheared
homologous
IL_4V88_468
NA
IL_3JAN_2351/S2/1720:1723,
1/S2/1811:1813		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_3JAN_3061/S2/1720:1731,
1/S2/1803:1813		No text annotation
IL_3JAN_2361/S2/1726:1731,
1/S2/1803:1808		No text annotation
geometric
IL_5TBW_476
NA
IL_3JAN_2371/S2/1733:1736,
1/S2/1798:1801		Double sheared
homologous
IL_4V88_471
NA
IL_3JAN_2381/S2/1739:1741,
1/S2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_87907.2
IL_3JAN_3071/S2/1739:1746,
1/S2/1788:1795		No text annotation
IL_3JAN_2391/S2/1742:1746,
1/S2/1788:1792		Triple sheared
homologous
IL_4V88_474
NA
IL_3JAN_2401/S2/1749:1752,
1/S2/1780:1785		No text annotation
IL_3JAN_3221/S2/1839:1841,
1/S2/1858:1859		Single stack bend
geometric
IL_4V84_420
IL_10569.1

Problematic loops

#loop idProblemSequence
IL_3JAN_242No text annotation
IL_3JAN_244Tandem non-canonical cWW pairs
IL_3JAN_245Partly complementary
IL_3JAN_247No text annotation
IL_3JAN_248No text annotation
IL_3JAN_249No text annotation
IL_3JAN_035Isolated non-canonical cWW pair
IL_3JAN_251No text annotation
IL_3JAN_040Other IL
IL_3JAN_253No text annotation
IL_3JAN_047No text annotation
IL_3JAN_255Isolated non-canonical cWW pair
IL_3JAN_256No text annotation
IL_3JAN_257Triple sheared with non-canonical cWW
IL_3JAN_259Tandem non-canonical cWW pairs
IL_3JAN_072Isolated cWS basepair
IL_3JAN_260No text annotation
IL_3JAN_264Tandem non-canonical cWW pairs with near WC pairs
IL_3JAN_267Partly complementary
IL_3JAN_268No text annotation
IL_3JAN_273No text annotation
IL_3JAN_275Partly complementary
IL_3JAN_276No text annotation
IL_3JAN_277No text annotation
IL_3JAN_146No text annotation
IL_3JAN_147No text annotation
IL_3JAN_151Tandem non-canonical cWW pairs
IL_3JAN_281No text annotation
IL_3JAN_283No text annotation
IL_3JAN_286No text annotation
IL_3JAN_289No text annotation
IL_3JAN_290No text annotation
IL_3JAN_186No text annotation
IL_3JAN_294No text annotation
IL_3JAN_198No text annotation
IL_3JAN_299No text annotation
IL_3JAN_300No text annotation
IL_3JAN_301No text annotation
IL_3JAN_305No text annotation
IL_3JAN_241No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3JAN_0011/4/3:4,
1/4/23:28,
1/4/43:44		No text annotation
geometric
J3_1E8O_001
J3_11375.2
J3_3JAN_0021/4/128:129,
1/4/168:175,
1/4/221:222		No text annotation
geometric
J3_1MFQ_002
J3_70599.1
J3_3JAN_0031/5/112:116,
1/5/155:160,
1/5/276:278		No text annotation
J3_3JAN_0261/5/112:122,
1/5/147:160,
1/5/276:278		No text annotation
J3_3JAN_0271/5/194:199,
1/5/215:228,
1/5/240:247		No text annotation
J3_3JAN_0281/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_3JAN_0041/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_3JAN_0471/5/443:458,
1/5/698:704,
1/5/1293:1304		No text annotation
J3_3JAN_0301/5/708:713,
1/5/955:978,
1/5/1276:1289		No text annotation
J3_3JAN_0051/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643		No text annotation
J3_3JAN_0311/5/1531:1537,
1/5/1622:1626,
1/5/1636:1643		No text annotation
J3_3JAN_0061/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614		No text annotation
homologous
J3_5TBW_005
NA
J3_3JAN_0331/5/1690:1727,
1/5/1802:1806,
1/5/1832:1846		No text annotation
J3_3JAN_0071/5/1969:1971,
1/5/1995:2001,
1/5/2016:2018		No text annotation
homologous
J3_5TBW_007
NA
J3_3JAN_0081/5/2393:2401,
1/5/2803:2807,
1/5/2819:2822		No text annotation
J3_3JAN_0091/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802		No text annotation
geometric
J3_4V9F_006
J3_19545.2
J3_3JAN_0101/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_3JAN_0481/5/2450:2457,
1/5/2464:2476,
1/5/2501:2509		No text annotation
J3_3JAN_0491/5/2549:2556,
1/5/2571:2575,
1/5/2757:2770		No text annotation
J3_3JAN_0111/5/2575:2578,
1/5/2583:2589,
1/5/2756:2757		No text annotation
J3_3JAN_0501/5/3934:3939,
1/5/4074:4088,
1/5/4161:4176		No text annotation
J3_3JAN_0121/5/4091:4095,
1/5/4113:4129,
1/5/4155:4158		No text annotation
J3_3JAN_0381/5/4091:4099,
1/5/4110:4129,
1/5/4155:4158		No text annotation
J3_3JAN_0391/5/4463:4470,
1/5/4485:4493,
1/5/4507:4513		No text annotation
J3_3JAN_0401/5/4748:4754,
1/5/4879:4888,
1/5/4931:4952		No text annotation
J3_3JAN_0131/5/4970:4972,
1/5/4986:4991,
1/5/5060:5063		No text annotation
J3_3JAN_0141/7/6:14,
1/7/65:66,
1/7/109:113		No text annotation
J3_3JAN_0151/8/44:45,
1/8/58:66,
1/8/92:99		No text annotation
J3_3JAN_0161/S2/40:41,
1/S2/481:487,
1/S2/512:514		No text annotation
homologous
J3_8P9A_068
J3_67856.4
J3_3JAN_0171/S2/682:685,
1/S2/917:922,
1/S2/1022:1023		No text annotation
J3_3JAN_0411/S2/682:685,
1/S2/917:923,
1/S2/1019:1023		No text annotation
J3_3JAN_0181/S2/1091:1096,
1/S2/1136:1140,
1/S2/1147:1158		No text annotation
J3_3JAN_0191/S2/1218:1222,
1/S2/1645:1651,
1/S2/1673:1680		No text annotation
J3_3JAN_0421/S2/1218:1223,
1/S2/1643:1651,
1/S2/1673:1680		No text annotation
J3_3JAN_0201/S2/1225:1228,
1/S2/1530:1532,
1/S2/1638:1641		No text annotation
homologous
J3_4V88_036
NA
J3_3JAN_0431/S2/1237:1244,
1/S2/1255:1266,
1/S2/1516:1520		No text annotation
homologous
J3_8P9A_078
J3_83516.4
J3_3JAN_0221/S2/1270:1277,
1/S2/1320:1324,
1/S2/1504:1512		No text annotation
J3_3JAN_0441/S2/1337:1345,
1/S2/1384:1389,
1/S2/1481:1490		No text annotation
J3_3JAN_0231/S2/1340:1345,
1/S2/1384:1389,
1/S2/1481:1486		No text annotation
homologous
J3_4V88_039
NA
J3_3JAN_0241/S2/1350:1351,
1/S2/1360:1366,
1/S2/1373:1379		No text annotation
J3_3JAN_0251/S2/1391:1399,
1/S2/1447:1453,
1/S2/1475:1479		No text annotation
J3_3JAN_0451/S2/1391:1399,
1/S2/1447:1456,
1/S2/1470:1479		No text annotation
J3_3JAN_0461/S2/1532:1540,
1/S2/1593:1610,
1/S2/1629:1638		No text annotation
J4_3JAN_0011/3/7:10,
1/3/25:27,
1/3/43:49,
1/3/65:66		tRNA junction
homologous
J4_3WQY_001
J4_70449.28
J4_3JAN_0021/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_3JAN_0031/5/194:199,
1/5/215:222,
1/5/226:228,
1/5/240:247		No text annotation
J4_3JAN_0041/5/980:984,
1/5/1069:1074,
1/5/1236:1246,
1/5/1264:1274		No text annotation
J4_3JAN_0101/5/2406:2410,
1/5/2434:2439,
1/5/2538:2539,
1/5/2777:2784		No text annotation
homologous
J4_8CRE_004
J4_69051.6
J4_3JAN_0061/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_3JAN_0071/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J4_3JAN_0081/S2/98:107,
1/S2/354:357,
1/S2/405:409,
1/S2/431:432		No text annotation
J4_3JAN_0091/S2/671:673,
1/S2/1032:1037,
1/S2/1078:1089,
1/S2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_3JAN_0141/5/1335:1341,
1/5/1515:1519,
1/5/1658:1662,
1/5/2287:2290,
1/5/2345:2351		No text annotation
J5_3JAN_0151/5/1352:1355,
1/5/1384:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504		No text annotation
J5_3JAN_0161/5/2358:2371,
1/5/2389:2401,
1/5/2803:2807,
1/5/2819:2829,
1/5/3856:3863		No text annotation
J5_3JAN_0041/5/2406:2410,
1/5/2434:2445,
1/5/2515:2519,
1/5/2536:2539,
1/5/2777:2784		No text annotation
J5_3JAN_0051/5/2847:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3841		No text annotation
J5_3JAN_0061/5/2855:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_3JAN_0071/5/3903:3911,
1/5/4391:4403,
1/5/4440:4453,
1/5/4528:4540,
1/5/4545:4557		No text annotation
J5_3JAN_0081/5/3920:3923,
1/5/4188:4192,
1/5/4202:4205,
1/5/4227:4228,
1/5/4375:4381		No text annotation
J5_3JAN_0091/5/4228:4237,
1/5/4287:4291,
1/5/4318:4319,
1/5/4328:4345,
1/5/4367:4375		No text annotation
J5_3JAN_0101/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:596,
1/S2/641:644		No text annotation
J5_3JAN_0111/S2/49:62,
1/S2/86:96,
1/S2/434:436,
1/S2/457:462,
1/S2/467:477		No text annotation
J5_3JAN_0171/S2/125:144,
1/S2/175:187,
1/S2/212:218,
1/S2/302:315,
1/S2/335:338		No text annotation
J5_3JAN_0131/S2/685:696,
1/S2/734:744,
1/S2/797:800,
1/S2/865:873,
1/S2/912:917		No text annotation
J6_3JAN_0021/5/3634:3638,
1/5/3650:3657,
1/5/3687:3698,
1/5/3752:3754,
1/5/3770:3781,
1/5/3811:3826		No text annotation
J7_3JAN_0021/5/1665:1674,
1/5/1681:1685,
1/5/1852:1860,
1/5/1874:1885,
1/5/1894:1901,
1/5/2075:2081,
1/5/2275:2284		No text annotation
J8_3JAN_0011/5/3920:3923,
1/5/4188:4192,
1/5/4202:4205,
1/5/4227:4237,
1/5/4287:4291,
1/5/4318:4319,
1/5/4328:4345,
1/5/4367:4381		No text annotation
J10_3JAN_0011/5/16:29,
1/5/53:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:45,
1/8/58:66,
1/8/92:106,
1/8/113:114,
1/8/136:141		No text annotation

Problematic loops

#loop idProblemSequence
J3_3JAN_029No text annotation
J3_3JAN_032No text annotation
J3_3JAN_034No text annotation
J3_3JAN_035No text annotation
J3_3JAN_036No text annotation
J3_3JAN_037No text annotation
J3_3JAN_021No text annotation
J4_3JAN_005No text annotation
J5_3JAN_001No text annotation
J5_3JAN_002No text annotation
J5_3JAN_003No text annotation
J5_3JAN_012No text annotation
J6_3JAN_001No text annotation
J7_3JAN_001No text annotation

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