HL_3JAN_028

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGCGAAAGACU

Length

11 nucleotides

Bulged bases

3JAN|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|1626
3JAN|1|5|G|1627
3JAN|1|5|C|1628
3JAN|1|5|G|1629
3JAN|1|5|A|1630
3JAN|1|5|A|1631
3JAN|1|5|A|1632
3JAN|1|5|G|1633
3JAN|1|5|A|1634
3JAN|1|5|C|1635
3JAN|1|5|U|1636

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain N

Ribosomal protein eL15

Chain j

Ribosomal protein eL37