HL_3JAN_030

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

3JAN|1|5|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_030 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.4313

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAN|1|5|C|1763
3JAN|1|5|G|1764
3JAN|1|5|A|1765
3JAN|1|5|A|1766
3JAN|1|5|A|1767
3JAN|1|5|C|1768
3JAN|1|5|G|1769

Current chains

Chain 5

28S ribosomal RNA

Nearby chains