HL_3JAN_039

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

3JAN|1|5|G|2421, 3JAN|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_039 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1985

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3JAN|1|5|A|2420
3JAN|1|5|G|2421
3JAN|1|5|C|2422
3JAN|1|5|A|2423
3JAN|1|5|G|2424
3JAN|1|5|U|2425
3JAN|1|5|U|2426

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uL22

Chain R

Ribosomal protein eL19

Chain l

Ribosomal protein eL39