3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CGAGCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAN_040 not in the Motif Atlas
Homologous match to HL_8C3A_033
Geometric discrepancy: 0.3099
The information below is about HL_8C3A_033
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

3JAN|1|5|C|2458
3JAN|1|5|G|2459
3JAN|1|5|A|2460
3JAN|1|5|G|2461
3JAN|1|5|C|2462
3JAN|1|5|G|2463

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain N
Ribosomal protein eL15
Chain j
Ribosomal protein eL37

Coloring options:


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