HL_3JAN_045

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGUUCUCUUU

Length

10 nucleotides

Bulged bases

3JAN|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_045 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2391

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3JAN|1|5|A|2623
3JAN|1|5|G|2624
3JAN|1|5|U|2625
3JAN|1|5|U|2626
3JAN|1|5|C|2627
3JAN|1|5|U|2628
3JAN|1|5|C|2629
3JAN|1|5|U|2630
3JAN|1|5|U|2631
3JAN|1|5|U|2632

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain U

Ribosomal protein eL22