HL_3JAN_055

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AAGAAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_055 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3825

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3JAN|1|5|A|3723
3JAN|1|5|A|3724
3JAN|1|5|G|3725
3JAN|1|5|A|3726
3JAN|1|5|A|3727
3JAN|1|5|A|3728
3JAN|1|5|U|3729

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain i

Ribosomal protein eL36

Chain o

Ribosomal protein eL42