HL_3JAN_062

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3JAN|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_062 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.3625

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

3JAN|1|5|C|4193
3JAN|1|5|U|4194
3JAN|1|5|G|4195
3JAN|1|5|G|4196
3JAN|1|5|G|4197
3JAN|1|5|G|4198
3JAN|1|5|C|4199
3JAN|1|5|G|4200
3JAN|1|5|G|4201

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain I

Ribosomal protein uL16

Chain b

Ribosomal protein eL29