HL_3JAN_066

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_066 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.2771

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAN|1|5|U|4321
3JAN|1|5|G|4322
3JAN|1|5|A|4323
3JAN|1|5|A|4324
3JAN|1|5|A|4325
3JAN|1|5|G|4326

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uL18

Chain T

Ribosomal protein eL21

Chain o

Ribosomal protein eL42