HL_3JAN_073

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCUGAGGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_073 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1782

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JAN|1|5|G|4644
3JAN|1|5|C|4645
3JAN|1|5|U|4646
3JAN|1|5|G|4647
3JAN|1|5|A|4648
3JAN|1|5|G|4649
3JAN|1|5|G|4650
3JAN|1|5|A|4651
3JAN|1|5|G|4652
3JAN|1|5|C|4653

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain U

Ribosomal protein eL22

Chain d

Ribosomal protein eL31