HL_3JAN_082

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

3JAN|1|8|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_082 not in the Motif Atlas

Homologous match to HL_8P9A_188

Geometric discrepancy: 0.4055

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

3JAN|1|8|C|107
3JAN|1|8|A|108
3JAN|1|8|C|109
3JAN|1|8|U|110
3JAN|1|8|U|111
3JAN|1|8|G|112

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

Ribosomal protein uL23

Chain j

Ribosomal protein eL37

Chain l

Ribosomal protein eL39