HL_3JAN_098

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGCGUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_098 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3138

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

3JAN|1|S2|G|697
3JAN|1|S2|G|698
3JAN|1|S2|C|730
3JAN|1|S2|G|731
3JAN|1|S2|U|732
3JAN|1|S2|C|733

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SH

Ribosomal protein eS7