HL_3JAN_102

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|G|956
3JAN|1|S2|A|957
3JAN|1|S2|G|958
3JAN|1|S2|G|959
3JAN|1|S2|U|960
3JAN|1|S2|G|961
3JAN|1|S2|A|962
3JAN|1|S2|A|963
3JAN|1|S2|A|964
3JAN|1|S2|U|965
3JAN|1|S2|U|966
3JAN|1|S2|C|967

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SF

Ribosomal protein uS7

Chain SO

Ribosomal protein uS11