3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
ACAGAUUGAUAGCUCUU
Length
17 nucleotides
Bulged bases
3JAN|1|S2|C|1292, 3JAN|1|S2|U|1300
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|A|1291
3JAN|1|S2|C|1292
3JAN|1|S2|A|1293
3JAN|1|S2|G|1294
3JAN|1|S2|A|1295
3JAN|1|S2|U|1296
3JAN|1|S2|U|1297
3JAN|1|S2|G|1298
3JAN|1|S2|A|1299
3JAN|1|S2|U|1300
3JAN|1|S2|A|1301
3JAN|1|S2|G|1302
3JAN|1|S2|C|1303
3JAN|1|S2|U|1304
3JAN|1|S2|C|1305
3JAN|1|S2|U|1306
3JAN|1|S2|U|1307

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SP
Ribosomal protein uS19
Chain Sd
Ribosomal protein uS14
Chain Sf
Ribosomal protein eS31

Coloring options:

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