HL_3JAN_109

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_109 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.2379

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAN|1|S2|A|1353
3JAN|1|S2|G|1354
3JAN|1|S2|C|1355
3JAN|1|S2|G|1356
3JAN|1|S2|A|1357
3JAN|1|S2|U|1358

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Ribosomal protein uS2

Chain SC

Ribosomal protein uS5