HL_3JAN_112

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_112 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3418

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

3JAN|1|S2|C|1460
3JAN|1|S2|G|1461
3JAN|1|S2|U|1462
3JAN|1|S2|U|1463
3JAN|1|S2|C|1464
3JAN|1|S2|A|1465
3JAN|1|S2|G|1466

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

Ribosomal protein eS17

Chain Sc

Ribosomal protein eS28

Chain Sg

Ribosomal protein RACK1