HL_3JAN_116

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGCGCCCACGG*C

Length

13 nucleotides

Bulged bases

3JAN|1|S2|G|1764, 3JAN|1|S2|C|1765, 3JAN|1|S2|C|1766, 3JAN|1|S2|C|1767, 3JAN|1|S2|A|1768, 3JAN|1|S2|C|1769, 3JAN|1|S2|G|1770

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_116 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.285

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

3JAN|1|S2|G|1760
3JAN|1|S2|U|1761
3JAN|1|S2|G|1771
3JAN|1|S2|C|1772
3JAN|1|S2|G|1764
3JAN|1|S2|C|1765
3JAN|1|S2|C|1766
3JAN|1|S2|C|1767
3JAN|1|S2|A|1768
3JAN|1|S2|C|1769
3JAN|1|S2|G|1770
3JAN|1|S2|G|1771
*
3JAN|1|S2|C|1772

Current chains

Chain S2

18S ribosomal RNA

Nearby chains