HL_3JAN_123

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

3JAN|1|5|C|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|C|1172
3JAN|1|5|G|1173
3JAN|1|5|G|1174
3JAN|1|5|A|1175
3JAN|1|5|C|1176
3JAN|1|5|U|1177
3JAN|1|5|G|1178
3JAN|1|5|U|1179
3JAN|1|5|C|1180
3JAN|1|5|C|1181
3JAN|1|5|C|1182
3JAN|1|5|C|1183
3JAN|1|5|A|1184
3JAN|1|5|G|1185
3JAN|1|5|U|1186
3JAN|1|5|G|1187
3JAN|1|5|C|1188
3JAN|1|5|G|1189

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Ribosomal protein uL18