HL_3JAN_125

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGUUCAGAUCCC

Length

12 nucleotides

Bulged bases

3JAN|1|5|U|2530, 3JAN|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|2522
3JAN|1|5|G|2523
3JAN|1|5|U|2524
3JAN|1|5|U|2525
3JAN|1|5|C|2526
3JAN|1|5|A|2527
3JAN|1|5|G|2528
3JAN|1|5|A|2529
3JAN|1|5|U|2530
3JAN|1|5|C|2531
3JAN|1|5|C|2532
3JAN|1|5|C|2533

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain X

Ribosomal protein uL23

Chain g

Ribosomal protein eL34