HL_3JAN_131

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCUCGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_131 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3036

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

3JAN|1|5|G|5020
3JAN|1|5|C|5021
3JAN|1|5|U|5022
3JAN|1|5|C|5023
3JAN|1|5|G|5028
3JAN|1|5|C|5029

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain SI

Ribosomal protein eS8

Chain U

Ribosomal protein eL22