HL_3JAP_002
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- UCUCAUAAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAP_002 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.1768
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
3JAP|1|1|U|31
3JAP|1|1|C|32
3JAP|1|1|U|33
3JAP|1|1|C|34
3JAP|1|1|A|35
3JAP|1|1|U|36
3JAP|1|1|A|37
3JAP|1|1|A|38
3JAP|1|1|A|39
Current chains
- Chain 1
- Met-tRNAi (U31:A39 variant)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- mRNA
- Chain Q
- uS9
- Chain i
- eIF1A
- Chain j
- eIF2 alpha
- Chain m
- eIF1
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