HL_3JAP_006

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

3JAP|1|2|U|158

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAP_006 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1996

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAP|1|2|G|153
3JAP|1|2|U|154
3JAP|1|2|A|155
3JAP|1|2|A|156
3JAP|1|2|U|157
3JAP|1|2|U|158
3JAP|1|2|C|159

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain Y

eS24