HL_3JAP_013
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 3JAP|1|2|C|401, 3JAP|1|2|G|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAP_013 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.23
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3JAP|1|2|C|392
3JAP|1|2|C|393
3JAP|1|2|U|394
3JAP|1|2|G|395
3JAP|1|2|A|396
3JAP|1|2|G|397
3JAP|1|2|A|398
3JAP|1|2|A|399
3JAP|1|2|A|400
3JAP|1|2|C|401
3JAP|1|2|G|402
3JAP|1|2|G|403
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- eS4
- Chain G
- eS6
- Chain I
- eS8
- Chain Y
- eS24
Coloring options: