HL_3JAP_020

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAP_020 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3175

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3JAP|1|2|C|777
3JAP|1|2|G|778
3JAP|1|2|A|779
3JAP|1|2|A|780
3JAP|1|2|A|781
3JAP|1|2|G|782

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain Y

eS24