HL_3JAP_041
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAP_041 not in the Motif Atlas
- Homologous match to HL_8P9A_209
- Geometric discrepancy: 0.3441
- The information below is about HL_8P9A_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
3JAP|1|2|A|899
3JAP|1|2|G|900
3JAP|1|2|G|901
3JAP|1|2|U|902
3JAP|1|2|G|903
3JAP|1|2|A|904
3JAP|1|2|A|905
3JAP|1|2|A|906
3JAP|1|2|U|907
3JAP|1|2|U|908
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- mRNA
- Chain B
- eS1
- Chain F
- uS7
- Chain O
- uS11
- Chain a
- eS26
- Chain j
- eIF2 alpha
Coloring options: