Motif HL_38491.2 Version HL_38491.2 of this group appears in releases 4.1 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_126 | 8GLP | 0.2327 | 0 | S2 | SSU rRNA | A | 957 | G | 958 | G | 959 | U | 960 | G | 961 | A | 962 | A | 963 | A | 964 | U | 965 | PSU | 966 | cWW | ntSH | tSH |
| 2 | HL_4LFB_015 | 4LFB | 0.1177 | 0 | A | SSU rRNA | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH |
| 3 | HL_8B0X_014 | 8B0X | 0.1054 | 0 | A | SSU rRNA | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH |
| 4 | HL_8CRE_210 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | A | 885 | G | 886 | G | 887 | U | 888 | G | 889 | A | 890 | A | 891 | A | 892 | U | 893 | U | 894 | cWW | tSH | ntSH |
| 5 | HL_8P9A_209 | 8P9A | 0.1493 | 0 | sR | SSU rRNA | A | 900 | G | 901 | G | 902 | U | 903 | G | 904 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | cWW | ntSH | |
| 6 | HL_8GLP_104 | 8GLP | 0.3365 | 1 | S2 | SSU rRNA | G | 1054 | A | 1055 | PSU | 1056 | C | 1057 | A | 1058 | G | 1059 | A | 1060 | A | 1062 | C | 1063 | C | 1064 | cWW | ncWB | |
| 7 | HL_8P9A_211 | 8P9A | 0.3192 | 1 | sR | SSU rRNA | G | 997 | A | 998 | U | 999 | C | 1000 | A | 1001 | G | 1002 | A | 1003 | A | 1005 | C | 1006 | C | 1007 | cWW | ||
| 8 | HL_8CRE_212 | 8CRE | 0.3327 | 1 | CM | SSU rRNA | G | 982 | A | 983 | U | 984 | C | 985 | A | 986 | G | 987 | A | 988 | A | 990 | C | 991 | C | 992 | cWW | ||
| 9 | HL_4LFB_017 | 4LFB | 0.3394 | 1 | A | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | |
| 10 | HL_8B0X_016 | 8B0X | 0.3272 | 1 | A | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | |
| 11 | HL_4TUE_223 | 4TUE | 0.3517 | 0 | XY | A-site ASL-SufJ | C | 31 | C | 32 | U | 33 | U | 34 | G | 35 | G | 36 | U | 37 | A | 38 | A | 39 | G | 40 | cWW | ncWB | |
| 12 | HL_9G4P_001 | 9G4P | 0.3720 | 0 | B | RNA (33-MER) | G | 14 | A | 15 | U | 16 | U | 17 | G | 18 | U | 19 | C | 20 | A | 21 | C | 22 | C | 23 | cWW | ncWB |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGUGAAAUG | 2 |
| AGGUGAAAUU | 2 |
| GAUCAGAUACC | 2 |
| GAUUAGAUACC | 2 |
| AGGUGAAAU(PSU) | 1 |
| GACAGAUACC | 1 |
| CCUUGGUAAG | 1 |
| GAUUGUCACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUGAAAU | 5 |
| AUCAGAUAC | 2 |
| AUUAGAUAC | 2 |
| A(PSU)CAGAUAC | 1 |
| CUUGGUAA | 1 |
| AUUGUCAC | 1 |
- Annotations
-
- (12)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.29 | Max 0.46
Coloring options: