HL_3JAQ_010

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

3JAQ|1|2|U|277, 3JAQ|1|2|U|279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_010 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3438

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3JAQ|1|2|C|274
3JAQ|1|2|C|275
3JAQ|1|2|U|276
3JAQ|1|2|U|277
3JAQ|1|2|G|278
3JAQ|1|2|U|279
3JAQ|1|2|G|280

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6