HL_3JAQ_012

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_012 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1384

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

3JAQ|1|2|U|367
3JAQ|1|2|A|368
3JAQ|1|2|A|369
3JAQ|1|2|G|370
3JAQ|1|2|G|371
3JAQ|1|2|G|372

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain J

uS4

Chain L

uS17

Chain W

uS8

Chain X

uS12