HL_3JAQ_023
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAQ_023 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.3229
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
3JAQ|1|2|A|899
3JAQ|1|2|G|900
3JAQ|1|2|G|901
3JAQ|1|2|U|902
3JAQ|1|2|G|903
3JAQ|1|2|A|904
3JAQ|1|2|A|905
3JAQ|1|2|A|906
3JAQ|1|2|U|907
3JAQ|1|2|U|908
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- eS1
- Chain O
- uS11
- Chain a
- eS26
- Chain j
- eIF2 alpha
Coloring options: