HL_3JAQ_025

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

3JAQ|1|2|A|1000, 3JAQ|1|2|U|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_025 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.3117

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

3JAQ|1|2|G|996
3JAQ|1|2|A|997
3JAQ|1|2|U|998
3JAQ|1|2|C|999
3JAQ|1|2|A|1000
3JAQ|1|2|G|1001
3JAQ|1|2|A|1002
3JAQ|1|2|U|1003
3JAQ|1|2|A|1004
3JAQ|1|2|C|1005
3JAQ|1|2|C|1006

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

mRNA

Chain O

uS11

Chain m

eIF1