HL_3JB9_004

3D structure

PDB id

3JB9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUGGGCUA

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JB9|1|P|U|122
3JB9|1|P|C|123
3JB9|1|P|U|124
3JB9|1|P|G|125
3JB9|1|P|G|126
3JB9|1|P|G|130
3JB9|1|P|C|131
3JB9|1|P|U|132
3JB9|1|P|A|133

Current chains

Chain P

U2 snRNA

Nearby chains

Chain l

Small nuclear ribonucleoprotein Sm D2