HL_3JBN_003

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_003 not in the Motif Atlas

Homologous match to HL_5HR6_003

Geometric discrepancy: 0.1755

The information below is about HL_5HR6_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

3JBN|1|7|G|53
3JBN|1|7|U|54
3JBN|1|7|U|55
3JBN|1|7|C|56
3JBN|1|7|A|57
3JBN|1|7|A|58
3JBN|1|7|A|59
3JBN|1|7|U|60
3JBN|1|7|C|61

Current chains

Chain 7

P-tRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

60S ribosomal protein uL5