Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3JBN_0501/AA/552:576No text annotation
HL_3JBN_0521/AA/663:670UNCG variation
geometric
HL_5J7L_200
NA
HL_3JBN_0561/AA/835:859No text annotation
geometric
HL_1GID_008
NA
HL_3JBN_0761/AA/1912:1957No text annotation
geometric
HL_4V9F_003
HL_75660.7
HL_3JBN_0801/AA/2111:2118No text annotation
homologous
HL_5TBW_041
NA
HL_3JBN_0841/AA/2403:2407No text annotation
homologous
HL_8C3A_045
NA
HL_3JBN_1121/AC/111:117No text annotation
geometric
HL_5TBW_075
NA

Problematic loops

#loop idProblemSequence
HL_3JBN_001tRNA D-loop
HL_3JBN_002No text annotation
HL_3JBN_003T-loop with 2 stacked bulged bases
HL_3JBN_004No text annotation
HL_3JBN_005GNRA
HL_3JBN_006No text annotation
HL_3JBN_007T-loop with 1 bulged base
HL_3JBN_008No text annotation
HL_3JBN_009GNRA related
HL_3JBN_010No text annotation
HL_3JBN_011No text annotation
HL_3JBN_012UNCG
HL_3JBN_013No text annotation
HL_3JBN_014No text annotation
HL_3JBN_015No text annotation
HL_3JBN_016No text annotation
HL_3JBN_017No text annotation
HL_3JBN_018No text annotation
HL_3JBN_019No text annotation
HL_3JBN_020No text annotation
HL_3JBN_021No text annotation
HL_3JBN_022GNRA
HL_3JBN_023No text annotation
HL_3JBN_024GNRA
HL_3JBN_025GNRA
HL_3JBN_026No text annotation
HL_3JBN_027No text annotation
HL_3JBN_028No text annotation
HL_3JBN_029T-loop related
HL_3JBN_030No text annotation
HL_3JBN_031GNRA
HL_3JBN_032Externally structured
HL_3JBN_033GNRA
HL_3JBN_034No text annotation
HL_3JBN_035No text annotation
HL_3JBN_036No text annotation
HL_3JBN_037No text annotation
HL_3JBN_038No text annotation
HL_3JBN_039No text annotation
HL_3JBN_040No text annotation
HL_3JBN_041No text annotation
HL_3JBN_042T-loop with 2 stacked bulged bases
HL_3JBN_043No text annotation
HL_3JBN_044T-loop with unstacked turn
HL_3JBN_045No text annotation
HL_3JBN_046Pseudoknot geometry
HL_3JBN_047GNRA
HL_3JBN_048GNRA
HL_3JBN_049No text annotation
HL_3JBN_114No text annotation
HL_3JBN_051No text annotation
HL_3JBN_053T-loop with 2 stacked bulged bases
HL_3JBN_054No text annotation
HL_3JBN_055GNRA
HL_3JBN_057UNCG variation
HL_3JBN_058GNRA
HL_3JBN_059No text annotation
HL_3JBN_060No text annotation
HL_3JBN_061Externally structured
HL_3JBN_062No text annotation
HL_3JBN_063GNRA
HL_3JBN_064No text annotation
HL_3JBN_065No text annotation
HL_3JBN_066No text annotation
HL_3JBN_067GNRA
HL_3JBN_068T-loop with 2 stacked bulged bases
HL_3JBN_069No text annotation
HL_3JBN_070GNRA variation
HL_3JBN_071No text annotation
HL_3JBN_072No text annotation
HL_3JBN_073GNRA
HL_3JBN_074No text annotation
HL_3JBN_075No text annotation
HL_3JBN_115No text annotation
HL_3JBN_077No text annotation
HL_3JBN_078No text annotation
HL_3JBN_079No text annotation
HL_3JBN_081GNRA
HL_3JBN_082UNCG
HL_3JBN_083No text annotation
HL_3JBN_085No text annotation
HL_3JBN_086GNRA
HL_3JBN_087GNRA with extra cWW
HL_3JBN_088No text annotation
HL_3JBN_089No text annotation
HL_3JBN_090No text annotation
HL_3JBN_091No text annotation
HL_3JBN_092No text annotation
HL_3JBN_093No text annotation
HL_3JBN_094No text annotation
HL_3JBN_095Pseudoknot geometry
HL_3JBN_096No text annotation
HL_3JBN_097GNRA
HL_3JBN_098UNCG variation
HL_3JBN_099No text annotation
HL_3JBN_100No text annotation
HL_3JBN_101No text annotation
HL_3JBN_102GNRA
HL_3JBN_116No text annotation
HL_3JBN_103GNRA
HL_3JBN_104Ribsomal LSU H95
HL_3JBN_105No text annotation
HL_3JBN_106No text annotation
HL_3JBN_107No text annotation
HL_3JBN_108No text annotation
HL_3JBN_117No text annotation
HL_3JBN_109No text annotation
HL_3JBN_110GNRA
HL_3JBN_118Pseudoknot with intercalation
HL_3JBN_111No text annotation
HL_3JBN_113No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3JBN_0971/AA/385:388,
1/AA/399:413
No text annotation
IL_3JBN_1391/AA/1475:1481,
1/AA/1499:1506
No text annotation
IL_3JBN_1471/AA/1759:1762,
1/AA/2090:2095
No text annotation

Problematic loops

#loop idProblemSequence
IL_3JBN_001No text annotation
IL_3JBN_002Single bulged C
IL_3JBN_003Triple sheared related
IL_3JBN_004No text annotation
IL_3JBN_005Minor groove platform
IL_3JBN_006No text annotation
IL_3JBN_007No text annotation
IL_3JBN_008Tandem non-canonical cWW pairs
IL_3JBN_009Major groove intercalation
IL_3JBN_010UAA/GAN related
IL_3JBN_011tWH-tWH-tHW-tHW
IL_3JBN_012No text annotation
IL_3JBN_013Single bulged A
IL_3JBN_014Kink-turn with non-sequential stacking
IL_3JBN_015No text annotation
IL_3JBN_016No text annotation
IL_3JBN_017Isolated cWH basepair
IL_3JBN_018Isolated non-canonical cWW pair
IL_3JBN_019Single bulged U
IL_3JBN_020C-loop
IL_3JBN_021Single bulged G
IL_3JBN_245No text annotation
IL_3JBN_022No text annotation
IL_3JBN_023SSU/LSU pseudoknot
IL_3JBN_024Single bulged U
IL_3JBN_025Kink-turn related
IL_3JBN_026No text annotation
IL_3JBN_027Isolated non-canonical cWW pair
IL_3JBN_028tSH-tHW-tHS
IL_3JBN_029No text annotation
IL_3JBN_030Tandem non-canonical cWW pairs
IL_3JBN_031Minor groove platform
IL_3JBN_032Isolated non-canonical cWW pair
IL_3JBN_033No text annotation
IL_3JBN_034No text annotation
IL_3JBN_035Single bulged A
IL_3JBN_036Isolated non-canonical cWW pair
IL_3JBN_037Tandem non-canonical cWW pairs
IL_3JBN_246Isolated non-canonical cWW pair
IL_3JBN_038Isolated non-canonical cWW contact
IL_3JBN_039Isolated non-canonical cWW pair
IL_3JBN_040Major groove platform; stack outside cWW
IL_3JBN_041Single bulged U
IL_3JBN_042Isolated non-canonical cWW pair
IL_3JBN_229No text annotation
IL_3JBN_043Isolated non-canonical cWW pair
IL_3JBN_044Isolated non-canonical cWW pair
IL_3JBN_045Kink-turn related
IL_3JBN_046Left turn
IL_3JBN_047tSH-tHW-tHS
IL_3JBN_048Decoding loop related
IL_3JBN_049Isolated non-canonical cWW pair
IL_3JBN_0508x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3JBN_051Single bulged A
IL_3JBN_052Single bulged G
IL_3JBN_053C-loop
IL_3JBN_054Isolated cWH basepair
IL_3JBN_055Minor groove platform
IL_3JBN_056Single bulged U
IL_3JBN_057Isolated cWS basepair
IL_3JBN_230No text annotation
IL_3JBN_058Minor groove platform with extra cWW
IL_3JBN_059Single bulged A
IL_3JBN_060Minor groove platform
IL_3JBN_247No text annotation
IL_3JBN_061Isolated non-canonical cWW pair
IL_3JBN_062No text annotation
IL_3JBN_063No text annotation
IL_3JBN_248No text annotation
IL_3JBN_231No text annotation
IL_3JBN_064Isolated non-canonical cWW pair
IL_3JBN_065Tandem non-canonical cWW pairs
IL_3JBN_066No text annotation
IL_3JBN_067Single stack bend
IL_3JBN_068Single stack bend
IL_3JBN_069No text annotation
IL_3JBN_070No text annotation
IL_3JBN_071Isolated non-canonical cWW pair
IL_3JBN_072Isolated non-canonical cWW pair
IL_3JBN_073Isolated non-canonical cWW pair
IL_3JBN_074Double sheared
IL_3JBN_075Single bulged U
IL_3JBN_076Single stack bend
IL_3JBN_077Single stack bend
IL_3JBN_078Isolated non-canonical cWW pair
IL_3JBN_079Double sheared
IL_3JBN_080Isolated non-canonical cWW pair
IL_3JBN_081Triple sheared
IL_3JBN_082Tandem non-canonical cWW pairs
IL_3JBN_083Single stack bend
IL_3JBN_084Single bulged U
IL_3JBN_085tSH-tHW-tHH-tHS
IL_3JBN_086No text annotation
IL_3JBN_087Multiple bulged bases
IL_3JBN_232No text annotation
IL_3JBN_088No text annotation
IL_3JBN_089Isolated non-canonical cWW pair
IL_3JBN_090No text annotation
IL_3JBN_249Triple non-canonical cWW pairs
IL_3JBN_233No text annotation
IL_3JBN_091Tandem non-canonical cWW pairs
IL_3JBN_250Single stack bend
IL_3JBN_092No text annotation
IL_3JBN_093No text annotation
IL_3JBN_094No text annotation
IL_3JBN_234No text annotation
IL_3JBN_095Single bulged U
IL_3JBN_235Isolated cWH basepair
IL_3JBN_236Tandem non-canonical cWW pairs
IL_3JBN_096Single bulged A
IL_3JBN_098Triple sheared with non-canonical cWW
IL_3JBN_099Isolated non-canonical cWW pair
IL_3JBN_100Tandem non-canonical cWW pairs
IL_3JBN_101No text annotation
IL_3JBN_251Tandem non-canonical cWW pairs
IL_3JBN_237Triple non-canonical cWW pairs
IL_3JBN_102Single stack bend
IL_3JBN_103No text annotation
IL_3JBN_104Single stack bend
IL_3JBN_105Major groove platform
IL_3JBN_106No text annotation
IL_3JBN_107Tandem non-canonical cWW pairs
IL_3JBN_108Isolated non-canonical cWW pair
IL_3JBN_109No text annotation
IL_3JBN_110No text annotation
IL_3JBN_111Single bulged A
IL_3JBN_112Isolated non-canonical cWW pair
IL_3JBN_252No text annotation
IL_3JBN_113Isolated non-canonical cWW pair
IL_3JBN_114tHW-tHW cross-strand stack
IL_3JBN_115Single bulged A
IL_3JBN_116Single bulged G
IL_3JBN_117Triple sheared
IL_3JBN_118Major groove platform with extra cWW
IL_3JBN_119Single bulged U
IL_3JBN_120Multiple bulged bases
IL_3JBN_121Single stack bend
IL_3JBN_122No text annotation
IL_3JBN_123Single bulged G
IL_3JBN_1247x7 Sarcin-Ricin with intercalated A; G-bulge
IL_3JBN_125Minor groove platform
IL_3JBN_126C-loop
IL_3JBN_127Tandem non-canonical cWW pairs
IL_3JBN_128Isolated non-canonical cWW pair
IL_3JBN_238No text annotation
IL_3JBN_129Decoding loop related
IL_3JBN_130Isolated non-canonical cWW pair
IL_3JBN_131Single bulged A
IL_3JBN_132Isolated non-canonical cWW pair
IL_3JBN_133UAA/GAN with extra cWW
IL_3JBN_134SSU/LSU pseudoknot
IL_3JBN_135Single bulged U
IL_3JBN_136No text annotation
IL_3JBN_137No text annotation
IL_3JBN_138Single bulged U
IL_3JBN_140No text annotation
IL_3JBN_141No text annotation
IL_3JBN_142Kink-turn
IL_3JBN_143Single bulged U
IL_3JBN_1447x6 Sarcin-Ricin; G-bulge
IL_3JBN_145No text annotation
IL_3JBN_146UAA/GAN
IL_3JBN_148Isolated non-canonical cWW pair
IL_3JBN_149Triple sheared
IL_3JBN_150Isolated non-canonical cWW pair
IL_3JBN_151Major groove platform
IL_3JBN_152Tandem non-canonical cWW pairs
IL_3JBN_153No text annotation
IL_3JBN_154Isolated non-canonical cWW pair
IL_3JBN_155Kink-turn
IL_3JBN_156Tandem non-canonical cWW pairs
IL_3JBN_157Tandem non-canonical cWW pairs
IL_3JBN_158Isolated non-canonical cWW pair
IL_3JBN_159No text annotation
IL_3JBN_160No text annotation
IL_3JBN_161Isolated tWW turn
IL_3JBN_162Major groove platform; stack outside cWW
IL_3JBN_239No text annotation
IL_3JBN_163Intercalated tWH
IL_3JBN_164tSH-tSH-tHH-tHS
IL_3JBN_165Isolated non-canonical cWW pair
IL_3JBN_166No text annotation
IL_3JBN_167Single bulged A
IL_3JBN_168Kink-turn related
IL_3JBN_169No text annotation
IL_3JBN_170Major groove intercalation
IL_3JBN_171Single stack bend
IL_3JBN_172No text annotation
IL_3JBN_173No text annotation
IL_3JBN_174Bulged stacked bases
IL_3JBN_175No text annotation
IL_3JBN_176Major groove platform with extra pair
IL_3JBN_177No text annotation
IL_3JBN_178Single bulged U
IL_3JBN_179Minor groove platform
IL_3JBN_180Isolated tHS basepair with bulges
IL_3JBN_181No text annotation
IL_3JBN_240Isolated non-canonical cWW pair
IL_3JBN_182No text annotation
IL_3JBN_183No text annotation
IL_3JBN_184Single bulged A
IL_3JBN_185No text annotation
IL_3JBN_186No text annotation
IL_3JBN_241No text annotation
IL_3JBN_187No text annotation
IL_3JBN_188Major groove platform
IL_3JBN_242No text annotation
IL_3JBN_189Isolated non-canonical cWW pair
IL_3JBN_190Major groove platform
IL_3JBN_191Major groove minor groove platform with extra cWW
IL_3JBN_192No text annotation
IL_3JBN_193Major groove platform
IL_3JBN_194No text annotation
IL_3JBN_195Multiple bulged bases
IL_3JBN_196Major groove platform with intercalation
IL_3JBN_197Isolated non-canonical cWW pair
IL_3JBN_198Single bulged A
IL_3JBN_199No text annotation
IL_3JBN_200Double sheared
IL_3JBN_201Isolated non-canonical cWW pair
IL_3JBN_2027x6 Sarcin-Ricin; G-bulge
IL_3JBN_203Major groove minor groove platform with tHH
IL_3JBN_204UAA/GAN related
IL_3JBN_205Multiple bulged bases
IL_3JBN_206UAA/GAN with extra cWW
IL_3JBN_207Multiple bulged bases
IL_3JBN_208Single bulged A
IL_3JBN_209No text annotation
IL_3JBN_243No text annotation
IL_3JBN_210Single stack bend
IL_3JBN_244Tandem non-canonical cWW pairs
IL_3JBN_211Triple non-canonical cWW pairs
IL_3JBN_212Tandem non-canonical cWW pairs
IL_3JBN_213Isolated non-canonical cWW pair
IL_3JBN_214Single bulged A
IL_3JBN_215Isolated non-canonical cWW pair
IL_3JBN_216No text annotation
IL_3JBN_217Single bulged U
IL_3JBN_218Double sheared; A in syn
IL_3JBN_219Single bulged A
IL_3JBN_220No text annotation
IL_3JBN_221Major groove minor groove platform; mini C-loop
IL_3JBN_222Symmetric double minor groove platform
IL_3JBN_2238x7 Sarcin-Ricin; G-bulge
IL_3JBN_224Isolated cWH basepair
IL_3JBN_225No text annotation
IL_3JBN_226Isolated non-canonical cWW pair
IL_3JBN_227No text annotation
IL_3JBN_228No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3JBN_0021/A/640:642,
1/A/929:933,
1/A/1034:1035
No text annotation
geometric
J3_4V88_080
NA
J3_3JBN_0371/A/640:642,
1/A/929:934,
1/A/1031:1035
No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_3JBN_0081/A/1281:1288,
1/A/1299:1310,
1/A/1700:1704
No text annotation
homologous
J3_8P9A_078
J3_88451.1
J3_3JBN_0421/AA/377:388,
1/AA/399:414,
1/AC/23:24
No text annotation
J3_3JBN_0261/AA/1688:1691,
1/AA/1700:1710,
1/AA/1723:1725
No text annotation
J3_3JBN_0451/AA/3575:3580,
1/AA/3621:3627,
1/AA/3658:3672
No text annotation
J4_3JBN_0031/A/629:631,
1/A/1044:1049,
1/A/1090:1101,
1/A/1204:1205
No text annotation
homologous
J4_8C3A_022
NA
J5_3JBN_0121/AA/2692:2699,
1/AA/3174:3182,
1/AA/3226:3235,
1/AA/3310:3316,
1/AA/3334:3339
No text annotation

Problematic loops

#loop idProblemSequence
J3_3JBN_001No text annotation
J3_3JBN_036No text annotation
J3_3JBN_003No text annotation
J3_3JBN_004No text annotation
J3_3JBN_005No text annotation
J3_3JBN_006No text annotation
J3_3JBN_007No text annotation
J3_3JBN_009No text annotation
J3_3JBN_038No text annotation
J3_3JBN_010No text annotation
J3_3JBN_011No text annotation
J3_3JBN_012No text annotation
J3_3JBN_039No text annotation
J3_3JBN_013No text annotation
J3_3JBN_014No text annotation
J3_3JBN_015No text annotation
J3_3JBN_040No text annotation
J3_3JBN_041No text annotation
J3_3JBN_016No text annotation
J3_3JBN_017No text annotation
J3_3JBN_018No text annotation
J3_3JBN_019No text annotation
J3_3JBN_043No text annotation
J3_3JBN_020No text annotation
J3_3JBN_021No text annotation
J3_3JBN_022No text annotation
J3_3JBN_023No text annotation
J3_3JBN_024No text annotation
J3_3JBN_025No text annotation
J3_3JBN_027No text annotation
J3_3JBN_028No text annotation
J3_3JBN_044No text annotation
J3_3JBN_029No text annotation
J3_3JBN_030No text annotation
J3_3JBN_031No text annotation
J3_3JBN_032No text annotation
J3_3JBN_033No text annotation
J3_3JBN_034No text annotation
J3_3JBN_035No text annotation
J3_3JBN_046No text annotation
J4_3JBN_001tRNA junction
J4_3JBN_002No text annotation
J4_3JBN_004No text annotation
J4_3JBN_005No text annotation
J4_3JBN_006No text annotation
J4_3JBN_007No text annotation
J4_3JBN_008No text annotation
J4_3JBN_009No text annotation
J4_3JBN_010No text annotation
J4_3JBN_011No text annotation
J4_3JBN_012No text annotation
J5_3JBN_001No text annotation
J5_3JBN_014No text annotation
J5_3JBN_002No text annotation
J5_3JBN_003No text annotation
J5_3JBN_004No text annotation
J5_3JBN_005No text annotation
J5_3JBN_015No text annotation
J5_3JBN_006No text annotation
J5_3JBN_007No text annotation
J5_3JBN_008No text annotation
J5_3JBN_009No text annotation
J5_3JBN_010No text annotation
J5_3JBN_011No text annotation
J5_3JBN_013No text annotation
J6_3JBN_001No text annotation
J6_3JBN_002No text annotation
J7_3JBN_001No text annotation

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